su: ignore --preserve-environment, it's mutually exclusive to --login.
Rows: 67 Columns: 522
── Column specification ────────────────────────────────────────────────────────
Delimiter: ","
chr  (155): redcap_repeat_instrument, paciente_rut, patient_substr8, patient...
dbl  (148): record_id, redcap_repeat_instance, patient_l, patient_substr1, p...
lgl  (196): cama_paciente, paciente_edad, reingreso_causa, reingreso_tipo, a...
dttm   (6): fecha_hospitalizacion, fecha_ingreso_uci, vmi_fecha_inicio_1, vm...
date  (17): datos_generales_today, fech, f_nac, antecedentes_today, vacuna_c...

ℹ Use `spec()` to retrieve the full column specification for this data.
ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message.

Listening on http://127.0.0.1:46027


processing file: ingreso.Rmd
output file: ingreso.knit.md

Warning: Package fancyhdr Warning: \headheight is too small (12.0pt): 
Warning: (fancyhdr)                Make it at least 30.02956pt, for example:
Warning: (fancyhdr)                \setlength{\headheight}{30.02956pt}.
Warning: (fancyhdr)                You might also make \topmargin smaller to compensate:
Warning: (fancyhdr)                \addtolength{\topmargin}{-18.02956pt}.
Warning: Package fancyhdr Warning: \headheight is too small (12.0pt): 
Warning: (fancyhdr)                Make it at least 30.02956pt, for example:
Warning: (fancyhdr)                \setlength{\headheight}{30.02956pt}.
Warning: (fancyhdr)                You might also make \topmargin smaller to compensate:
Warning: (fancyhdr)                \addtolength{\topmargin}{-18.02956pt}.

Output created: /tmp/RtmpaA5hH7/file3140475d6e6a.pdf
Warning in file.create(to[okay]) :
  cannot create file 'reportDir/13632885-9_ingreso_2023-08-11.pdf', reason 'Permission denied'


processing file: ingreso.Rmd
Quitting from lines 2-85 (ingreso.Rmd) 
Warning: Error in if: argument is of length zero
  1: runApp


processing file: ingreso.Rmd
Quitting from lines 2-85 (ingreso.Rmd) 
Warning: Error in if: argument is of length zero
  1: runApp


processing file: ingreso.Rmd
Quitting from lines 2-85 (ingreso.Rmd) 
Warning: Error in if: argument is of length zero
  1: runApp


processing file: ingreso.Rmd
Quitting from lines 2-85 (ingreso.Rmd) 
Warning: Error in if: argument is of length zero
  1: runApp


processing file: ingreso.Rmd
Quitting from lines 2-85 (ingreso.Rmd) 
Warning: Error in if: argument is of length zero
  1: runApp


processing file: ingreso.Rmd
Quitting from lines 2-85 (ingreso.Rmd) 
Warning: Error in if: argument is of length zero
  1: runApp


processing file: ingreso.Rmd
output file: ingreso.knit.md

Warning: Package fancyhdr Warning: \headheight is too small (12.0pt): 
Warning: (fancyhdr)                Make it at least 30.02956pt, for example:
Warning: (fancyhdr)                \setlength{\headheight}{30.02956pt}.
Warning: (fancyhdr)                You might also make \topmargin smaller to compensate:
Warning: (fancyhdr)                \addtolength{\topmargin}{-18.02956pt}.
Warning: Package fancyhdr Warning: \headheight is too small (12.0pt): 
Warning: (fancyhdr)                Make it at least 30.02956pt, for example:
Warning: (fancyhdr)                \setlength{\headheight}{30.02956pt}.
Warning: (fancyhdr)                You might also make \topmargin smaller to compensate:
Warning: (fancyhdr)                \addtolength{\topmargin}{-18.02956pt}.

Output created: /tmp/RtmpaA5hH7/file3140730327be.pdf
Warning in file.create(to[okay]) :
  cannot create file 'reportDir/13632885-9_ingreso_2023-08-11.pdf', reason 'Permission denied'
Warning in file(con, "w") :
  cannot open file '/home/app/ShinyApps/UCI/logs/UCI/shinylogs_UCI_1691753762177629000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
Warning: The `x` argument of `as_tibble.matrix()` must have unique column names if
`.name_repair` is omitted as of tibble 2.0.0.
ℹ Using compatibility `.name_repair`.
Warning in file(con, "w") :
  cannot open file '/home/app/ShinyApps/UCI/logs/UCI/shinylogs_UCI_1691754184715682000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
R: src/unix/core.c:258: uv__finish_close: Assertion `handle->flags & UV_HANDLE_CLOSING' failed.
-bash: line 1: 12608 Aborted                 R --no-save --slave -f \/opt\/shiny-server\/R\/SockJSAdapter\.R