su: ignore --preserve-environment, it's mutually exclusive to --login.

Listening on http://127.0.0.1:45305
Rows: 206 Columns: 522
── Column specification ────────────────────────────────────────────────────────
Delimiter: ","
chr  (211): redcap_repeat_instrument, paciente_rut, patient_substr1, patient...
dbl  (149): record_id, redcap_repeat_instance, patient_l, patient_substr2, p...
lgl  (131): cama_paciente, paciente_edad, alcohol_carga_v2, tipo_de_inmunosu...
dttm   (8): fecha_hospitalizacion, fecha_ingreso_uci, vmi_fecha_inicio_1, vm...
date  (23): datos_generales_today, fech, f_nac, antecedentes_today, vacuna_c...

ℹ Use `spec()` to retrieve the full column specification for this data.
ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message.


processing file: egreso.Rmd
output file: egreso.knit.md

Warning: Package fancyhdr Warning: \headheight is too small (12.0pt): 
Warning: (fancyhdr)                Make it at least 30.02956pt, for example:
Warning: (fancyhdr)                \setlength{\headheight}{30.02956pt}.
Warning: (fancyhdr)                You might also make \topmargin smaller to compensate:
Warning: (fancyhdr)                \addtolength{\topmargin}{-18.02956pt}.
Warning: Package fancyhdr Warning: \headheight is too small (12.0pt): 
Warning: (fancyhdr)                Make it at least 30.02956pt, for example:
Warning: (fancyhdr)                \setlength{\headheight}{30.02956pt}.
Warning: (fancyhdr)                You might also make \topmargin smaller to compensate:
Warning: (fancyhdr)                \addtolength{\topmargin}{-18.02956pt}.
Warning: Package fancyhdr Warning: \headheight is too small (12.0pt): 
Warning: (fancyhdr)                Make it at least 30.02956pt, for example:
Warning: (fancyhdr)                \setlength{\headheight}{30.02956pt}.
Warning: (fancyhdr)                You might also make \topmargin smaller to compensate:
Warning: (fancyhdr)                \addtolength{\topmargin}{-18.02956pt}.

Output created: /tmp/RtmpJZpb2B/file5f70418cd26e.pdf
Warning in file.create(to[okay]) :
  cannot create file 'reportDir/12218036-0_egreso_2023-08-29.pdf', reason 'Permission denied'
Rows: 206 Columns: 522
── Column specification ────────────────────────────────────────────────────────
Delimiter: ","
chr  (211): redcap_repeat_instrument, paciente_rut, patient_substr1, patient...
dbl  (149): record_id, redcap_repeat_instance, patient_l, patient_substr2, p...
lgl  (131): cama_paciente, paciente_edad, alcohol_carga_v2, tipo_de_inmunosu...
dttm   (8): fecha_hospitalizacion, fecha_ingreso_uci, vmi_fecha_inicio_1, vm...
date  (23): datos_generales_today, fech, f_nac, antecedentes_today, vacuna_c...

ℹ Use `spec()` to retrieve the full column specification for this data.
ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message.


processing file: egreso.Rmd
output file: egreso.knit.md

Warning: Package fancyhdr Warning: \headheight is too small (12.0pt): 
Warning: (fancyhdr)                Make it at least 30.02956pt, for example:
Warning: (fancyhdr)                \setlength{\headheight}{30.02956pt}.
Warning: (fancyhdr)                You might also make \topmargin smaller to compensate:
Warning: (fancyhdr)                \addtolength{\topmargin}{-18.02956pt}.
Warning: Package fancyhdr Warning: \headheight is too small (12.0pt): 
Warning: (fancyhdr)                Make it at least 30.02956pt, for example:
Warning: (fancyhdr)                \setlength{\headheight}{30.02956pt}.
Warning: (fancyhdr)                You might also make \topmargin smaller to compensate:
Warning: (fancyhdr)                \addtolength{\topmargin}{-18.02956pt}.

Output created: /tmp/RtmpJZpb2B/file5f70780ec88d.pdf
Warning in file.create(to[okay]) :
  cannot create file 'reportDir/10129740-3_egreso_2023-08-29.pdf', reason 'Permission denied'
Warning in file(con, "w") :
  cannot open file '/home/app/ShinyApps/UCI/logs/UCI/shinylogs_UCI_1693338626451169000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp


processing file: egreso.Rmd
output file: egreso.knit.md

Warning: Package fancyhdr Warning: \headheight is too small (12.0pt): 
Warning: (fancyhdr)                Make it at least 30.02956pt, for example:
Warning: (fancyhdr)                \setlength{\headheight}{30.02956pt}.
Warning: (fancyhdr)                You might also make \topmargin smaller to compensate:
Warning: (fancyhdr)                \addtolength{\topmargin}{-18.02956pt}.
Warning: Package fancyhdr Warning: \headheight is too small (12.0pt): 
Warning: (fancyhdr)                Make it at least 30.02956pt, for example:
Warning: (fancyhdr)                \setlength{\headheight}{30.02956pt}.
Warning: (fancyhdr)                You might also make \topmargin smaller to compensate:
Warning: (fancyhdr)                \addtolength{\topmargin}{-18.02956pt}.

Output created: /tmp/RtmpJZpb2B/file5f706fa6719b.pdf
Warning in file.create(to[okay]) :
  cannot create file 'reportDir/10129740-3_egreso_2023-08-29.pdf', reason 'Permission denied'
Rows: 206 Columns: 522
── Column specification ────────────────────────────────────────────────────────
Delimiter: ","
chr  (211): redcap_repeat_instrument, paciente_rut, patient_substr1, patient...
dbl  (149): record_id, redcap_repeat_instance, patient_l, patient_substr2, p...
lgl  (131): cama_paciente, paciente_edad, alcohol_carga_v2, tipo_de_inmunosu...
dttm   (8): fecha_hospitalizacion, fecha_ingreso_uci, vmi_fecha_inicio_1, vm...
date  (23): datos_generales_today, fech, f_nac, antecedentes_today, vacuna_c...

ℹ Use `spec()` to retrieve the full column specification for this data.
ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message.


processing file: egreso.Rmd
Quitting from lines 2-79 (egreso.Rmd) 
Warning: Error in if: argument is of length zero
  1: runApp
Warning in file(con, "w") :
  cannot open file '/home/app/ShinyApps/UCI/logs/UCI/shinylogs_UCI_1693338881780810000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp


processing file: egreso.Rmd
Quitting from lines 2-79 (egreso.Rmd) 
Warning: Error in if: argument is of length zero
  1: runApp


processing file: egreso.Rmd
Quitting from lines 2-79 (egreso.Rmd) 
Warning: Error in if: argument is of length zero
  1: runApp


processing file: egreso.Rmd
Quitting from lines 2-79 (egreso.Rmd) 
Warning: Error in if: argument is of length zero
  1: runApp


processing file: egreso.Rmd
output file: egreso.knit.md

Warning: Package fancyhdr Warning: \headheight is too small (12.0pt): 
Warning: (fancyhdr)                Make it at least 30.02956pt, for example:
Warning: (fancyhdr)                \setlength{\headheight}{30.02956pt}.
Warning: (fancyhdr)                You might also make \topmargin smaller to compensate:
Warning: (fancyhdr)                \addtolength{\topmargin}{-18.02956pt}.
Warning: Package fancyhdr Warning: \headheight is too small (12.0pt): 
Warning: (fancyhdr)                Make it at least 30.02956pt, for example:
Warning: (fancyhdr)                \setlength{\headheight}{30.02956pt}.
Warning: (fancyhdr)                You might also make \topmargin smaller to compensate:
Warning: (fancyhdr)                \addtolength{\topmargin}{-18.02956pt}.

Output created: /tmp/RtmpJZpb2B/file5f70797c1967.pdf
Warning in file.create(to[okay]) :
  cannot create file 'reportDir/10129740-3_egreso_2023-08-29.pdf', reason 'Permission denied'


processing file: egreso.Rmd
output file: egreso.knit.md

Warning: Package fancyhdr Warning: \headheight is too small (12.0pt): 
Warning: (fancyhdr)                Make it at least 30.02956pt, for example:
Warning: (fancyhdr)                \setlength{\headheight}{30.02956pt}.
Warning: (fancyhdr)                You might also make \topmargin smaller to compensate:
Warning: (fancyhdr)                \addtolength{\topmargin}{-18.02956pt}.
Warning: Package fancyhdr Warning: \headheight is too small (12.0pt): 
Warning: (fancyhdr)                Make it at least 30.02956pt, for example:
Warning: (fancyhdr)                \setlength{\headheight}{30.02956pt}.
Warning: (fancyhdr)                You might also make \topmargin smaller to compensate:
Warning: (fancyhdr)                \addtolength{\topmargin}{-18.02956pt}.

Output created: /tmp/RtmpJZpb2B/file5f707b84bc6a.pdf
Warning in file.create(to[okay]) :
  cannot create file 'reportDir/10129740-3_egreso_2023-08-29.pdf', reason 'Permission denied'
Rows: 207 Columns: 522
── Column specification ────────────────────────────────────────────────────────
Delimiter: ","
chr  (211): redcap_repeat_instrument, paciente_rut, patient_substr1, patient...
dbl  (149): record_id, redcap_repeat_instance, patient_l, patient_substr2, p...
lgl  (131): cama_paciente, paciente_edad, alcohol_carga_v2, tipo_de_inmunosu...
dttm   (8): fecha_hospitalizacion, fecha_ingreso_uci, vmi_fecha_inicio_1, vm...
date  (23): datos_generales_today, fech, f_nac, antecedentes_today, vacuna_c...

ℹ Use `spec()` to retrieve the full column specification for this data.
ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message.


processing file: egreso.Rmd
output file: egreso.knit.md

Warning: Package fancyhdr Warning: \headheight is too small (12.0pt): 
Warning: (fancyhdr)                Make it at least 30.02956pt, for example:
Warning: (fancyhdr)                \setlength{\headheight}{30.02956pt}.
Warning: (fancyhdr)                You might also make \topmargin smaller to compensate:
Warning: (fancyhdr)                \addtolength{\topmargin}{-18.02956pt}.
Warning: Package fancyhdr Warning: \headheight is too small (12.0pt): 
Warning: (fancyhdr)                Make it at least 30.02956pt, for example:
Warning: (fancyhdr)                \setlength{\headheight}{30.02956pt}.
Warning: (fancyhdr)                You might also make \topmargin smaller to compensate:
Warning: (fancyhdr)                \addtolength{\topmargin}{-18.02956pt}.

Output created: /tmp/RtmpJZpb2B/file5f70305147db.pdf
Warning in file.create(to[okay]) :
  cannot create file 'reportDir/6377063-9_egreso_2023-08-29.pdf', reason 'Permission denied'
Rows: 207 Columns: 522
── Column specification ────────────────────────────────────────────────────────
Delimiter: ","
chr  (211): redcap_repeat_instrument, paciente_rut, patient_substr1, patient...
dbl  (149): record_id, redcap_repeat_instance, patient_l, patient_substr2, p...
lgl  (131): cama_paciente, paciente_edad, alcohol_carga_v2, tipo_de_inmunosu...
dttm   (8): fecha_hospitalizacion, fecha_ingreso_uci, vmi_fecha_inicio_1, vm...
date  (23): datos_generales_today, fech, f_nac, antecedentes_today, vacuna_c...

ℹ Use `spec()` to retrieve the full column specification for this data.
ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message.


processing file: egreso.Rmd
output file: egreso.knit.md

Warning: Package fancyhdr Warning: \headheight is too small (12.0pt): 
Warning: (fancyhdr)                Make it at least 30.02956pt, for example:
Warning: (fancyhdr)                \setlength{\headheight}{30.02956pt}.
Warning: (fancyhdr)                You might also make \topmargin smaller to compensate:
Warning: (fancyhdr)                \addtolength{\topmargin}{-18.02956pt}.
Warning: Package fancyhdr Warning: \headheight is too small (12.0pt): 
Warning: (fancyhdr)                Make it at least 30.02956pt, for example:
Warning: (fancyhdr)                \setlength{\headheight}{30.02956pt}.
Warning: (fancyhdr)                You might also make \topmargin smaller to compensate:
Warning: (fancyhdr)                \addtolength{\topmargin}{-18.02956pt}.

Output created: /tmp/RtmpJZpb2B/file5f706a198a18.pdf
Warning in file.create(to[okay]) :
  cannot create file 'reportDir/11084012-8_egreso_2023-08-29.pdf', reason 'Permission denied'
Rows: 207 Columns: 522
── Column specification ────────────────────────────────────────────────────────
Delimiter: ","
chr  (211): redcap_repeat_instrument, paciente_rut, patient_substr1, patient...
dbl  (149): record_id, redcap_repeat_instance, patient_l, patient_substr2, p...
lgl  (131): cama_paciente, paciente_edad, alcohol_carga_v2, tipo_de_inmunosu...
dttm   (8): fecha_hospitalizacion, fecha_ingreso_uci, vmi_fecha_inicio_1, vm...
date  (23): datos_generales_today, fech, f_nac, antecedentes_today, vacuna_c...

ℹ Use `spec()` to retrieve the full column specification for this data.
ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message.
Rows: 207 Columns: 522
── Column specification ────────────────────────────────────────────────────────
Delimiter: ","
chr  (211): redcap_repeat_instrument, paciente_rut, patient_substr1, patient...
dbl  (149): record_id, redcap_repeat_instance, patient_l, patient_substr2, p...
lgl  (131): cama_paciente, paciente_edad, alcohol_carga_v2, tipo_de_inmunosu...
dttm   (8): fecha_hospitalizacion, fecha_ingreso_uci, vmi_fecha_inicio_1, vm...
date  (23): datos_generales_today, fech, f_nac, antecedentes_today, vacuna_c...

ℹ Use `spec()` to retrieve the full column specification for this data.
ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message.


processing file: ingreso.Rmd
output file: ingreso.knit.md

Warning: Package fancyhdr Warning: \headheight is too small (12.0pt): 
Warning: (fancyhdr)                Make it at least 30.02956pt, for example:
Warning: (fancyhdr)                \setlength{\headheight}{30.02956pt}.
Warning: (fancyhdr)                You might also make \topmargin smaller to compensate:
Warning: (fancyhdr)                \addtolength{\topmargin}{-18.02956pt}.
Warning: Package fancyhdr Warning: \headheight is too small (12.0pt): 
Warning: (fancyhdr)                Make it at least 30.02956pt, for example:
Warning: (fancyhdr)                \setlength{\headheight}{30.02956pt}.
Warning: (fancyhdr)                You might also make \topmargin smaller to compensate:
Warning: (fancyhdr)                \addtolength{\topmargin}{-18.02956pt}.
Warning: Package fancyhdr Warning: \headheight is too small (12.0pt): 
Warning: (fancyhdr)                Make it at least 30.02956pt, for example:
Warning: (fancyhdr)                \setlength{\headheight}{30.02956pt}.
Warning: (fancyhdr)                You might also make \topmargin smaller to compensate:
Warning: (fancyhdr)                \addtolength{\topmargin}{-18.02956pt}.
Warning: Package fancyhdr Warning: \headheight is too small (12.0pt): 
Warning: (fancyhdr)                Make it at least 30.02956pt, for example:
Warning: (fancyhdr)                \setlength{\headheight}{30.02956pt}.
Warning: (fancyhdr)                You might also make \topmargin smaller to compensate:
Warning: (fancyhdr)                \addtolength{\topmargin}{-18.02956pt}.

Output created: /tmp/RtmpJZpb2B/file5f702a29ea23.pdf
Warning in file.create(to[okay]) :
  cannot create file 'reportDir/13524308-6_ingreso_2023-08-29.pdf', reason 'Permission denied'
Rows: 209 Columns: 522
── Column specification ────────────────────────────────────────────────────────
Delimiter: ","
chr  (211): redcap_repeat_instrument, paciente_rut, patient_substr1, patient...
dbl  (149): record_id, redcap_repeat_instance, patient_l, patient_substr2, p...
lgl  (131): cama_paciente, paciente_edad, alcohol_carga_v2, tipo_de_inmunosu...
dttm   (8): fecha_hospitalizacion, fecha_ingreso_uci, vmi_fecha_inicio_1, vm...
date  (23): datos_generales_today, fech, f_nac, antecedentes_today, vacuna_c...

ℹ Use `spec()` to retrieve the full column specification for this data.
ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message.


processing file: ingreso.Rmd
output file: ingreso.knit.md

Warning: Package fancyhdr Warning: \headheight is too small (12.0pt): 
Warning: (fancyhdr)                Make it at least 30.02956pt, for example:
Warning: (fancyhdr)                \setlength{\headheight}{30.02956pt}.
Warning: (fancyhdr)                You might also make \topmargin smaller to compensate:
Warning: (fancyhdr)                \addtolength{\topmargin}{-18.02956pt}.
Warning: Package fancyhdr Warning: \headheight is too small (12.0pt): 
Warning: (fancyhdr)                Make it at least 30.02956pt, for example:
Warning: (fancyhdr)                \setlength{\headheight}{30.02956pt}.
Warning: (fancyhdr)                You might also make \topmargin smaller to compensate:
Warning: (fancyhdr)                \addtolength{\topmargin}{-18.02956pt}.

Output created: /tmp/RtmpJZpb2B/file5f7046d668bc.pdf
Warning in file.create(to[okay]) :
  cannot create file 'reportDir/7636888-0_ingreso_2023-08-29.pdf', reason 'Permission denied'
Warning in file(con, "w") :
  cannot open file '/home/app/ShinyApps/UCI/logs/UCI/shinylogs_UCI_1693354226130671000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
Rows: 209 Columns: 522
── Column specification ────────────────────────────────────────────────────────
Delimiter: ","
chr  (211): redcap_repeat_instrument, paciente_rut, patient_substr1, patient...
dbl  (149): record_id, redcap_repeat_instance, patient_l, patient_substr2, p...
lgl  (131): cama_paciente, paciente_edad, alcohol_carga_v2, tipo_de_inmunosu...
dttm   (8): fecha_hospitalizacion, fecha_ingreso_uci, vmi_fecha_inicio_1, vm...
date  (23): datos_generales_today, fech, f_nac, antecedentes_today, vacuna_c...

ℹ Use `spec()` to retrieve the full column specification for this data.
ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message.
Rows: 211 Columns: 522
── Column specification ────────────────────────────────────────────────────────
Delimiter: ","
chr  (211): redcap_repeat_instrument, paciente_rut, patient_substr1, patient...
dbl  (149): record_id, redcap_repeat_instance, patient_l, patient_substr2, p...
lgl  (131): cama_paciente, paciente_edad, alcohol_carga_v2, tipo_de_inmunosu...
dttm   (8): fecha_hospitalizacion, fecha_ingreso_uci, vmi_fecha_inicio_1, vm...
date  (23): datos_generales_today, fech, f_nac, antecedentes_today, vacuna_c...

ℹ Use `spec()` to retrieve the full column specification for this data.
ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message.
Warning in file(con, "w") :
  cannot open file '/home/app/ShinyApps/UCI/logs/UCI/shinylogs_UCI_1693376305869151000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
R: src/unix/core.c:258: uv__finish_close: Assertion `handle->flags & UV_HANDLE_CLOSING' failed.
-bash: line 1: 24432 Aborted                 R --no-save --slave -f \/opt\/shiny-server\/R\/SockJSAdapter\.R