su: ignore --preserve-environment, it's mutually exclusive to --login. Listening on http://127.0.0.1:43170 Rows: 217 Columns: 522 ── Column specification ──────────────────────────────────────────────────────── Delimiter: "," chr (212): redcap_repeat_instrument, paciente_rut, patient_substr8, patient... dbl (150): record_id, redcap_repeat_instance, patient_l, patient_substr1, p... lgl (129): cama_paciente, paciente_edad, alcohol_carga_v2, tipo_de_inmunosu... dttm (8): fecha_hospitalizacion, fecha_ingreso_uci, vmi_fecha_inicio_1, vm... date (23): datos_generales_today, fech, f_nac, antecedentes_today, vacuna_c... ℹ Use `spec()` to retrieve the full column specification for this data. ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message. Rows: 218 Columns: 522 ── Column specification ──────────────────────────────────────────────────────── Delimiter: "," chr (212): redcap_repeat_instrument, paciente_rut, patient_substr8, patient... dbl (150): record_id, redcap_repeat_instance, patient_l, patient_substr1, p... lgl (129): cama_paciente, paciente_edad, alcohol_carga_v2, tipo_de_inmunosu... dttm (8): fecha_hospitalizacion, fecha_ingreso_uci, vmi_fecha_inicio_1, vm... date (23): datos_generales_today, fech, f_nac, antecedentes_today, vacuna_c... ℹ Use `spec()` to retrieve the full column specification for this data. ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message. Warning in file(con, "w") : cannot open file '/home/app/ShinyApps/UCI/logs/UCI/shinylogs_UCI_1693513530681889000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp Rows: 220 Columns: 522 ── Column specification ──────────────────────────────────────────────────────── Delimiter: "," chr (212): redcap_repeat_instrument, paciente_rut, patient_substr8, patient... dbl (150): record_id, redcap_repeat_instance, patient_l, patient_substr1, p... lgl (129): cama_paciente, paciente_edad, alcohol_carga_v2, tipo_de_inmunosu... dttm (8): fecha_hospitalizacion, fecha_ingreso_uci, vmi_fecha_inicio_1, vm... date (23): datos_generales_today, fech, f_nac, antecedentes_today, vacuna_c... ℹ Use `spec()` to retrieve the full column specification for this data. ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message. Warning in file(con, "w") : cannot open file '/home/app/ShinyApps/UCI/logs/UCI/shinylogs_UCI_1693516984514450000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp Rows: 220 Columns: 522 ── Column specification ──────────────────────────────────────────────────────── Delimiter: "," chr (212): redcap_repeat_instrument, paciente_rut, patient_substr8, patient... dbl (150): record_id, redcap_repeat_instance, patient_l, patient_substr1, p... lgl (129): cama_paciente, paciente_edad, alcohol_carga_v2, tipo_de_inmunosu... dttm (8): fecha_hospitalizacion, fecha_ingreso_uci, vmi_fecha_inicio_1, vm... date (23): datos_generales_today, fech, f_nac, antecedentes_today, vacuna_c... ℹ Use `spec()` to retrieve the full column specification for this data. ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message. Rows: 220 Columns: 522 ── Column specification ──────────────────────────────────────────────────────── Delimiter: "," chr (212): redcap_repeat_instrument, paciente_rut, patient_substr8, patient... dbl (150): record_id, redcap_repeat_instance, patient_l, patient_substr1, p... lgl (129): cama_paciente, paciente_edad, alcohol_carga_v2, tipo_de_inmunosu... dttm (8): fecha_hospitalizacion, fecha_ingreso_uci, vmi_fecha_inicio_1, vm... date (23): datos_generales_today, fech, f_nac, antecedentes_today, vacuna_c... ℹ Use `spec()` to retrieve the full column specification for this data. ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message. Warning in file(con, "w") : cannot open file '/home/app/ShinyApps/UCI/logs/UCI/shinylogs_UCI_1693539365851146000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp Rows: 222 Columns: 522 ── Column specification ──────────────────────────────────────────────────────── Delimiter: "," chr (212): redcap_repeat_instrument, paciente_rut, patient_substr8, patient... dbl (150): record_id, redcap_repeat_instance, patient_l, patient_substr1, p... lgl (129): cama_paciente, paciente_edad, alcohol_carga_v2, tipo_de_inmunosu... dttm (8): fecha_hospitalizacion, fecha_ingreso_uci, vmi_fecha_inicio_1, vm... date (23): datos_generales_today, fech, f_nac, antecedentes_today, vacuna_c... ℹ Use `spec()` to retrieve the full column specification for this data. ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message. processing file: ingreso.Rmd output file: ingreso.knit.md Warning: Package fancyhdr Warning: \headheight is too small (12.0pt): Warning: (fancyhdr) Make it at least 30.02956pt, for example: Warning: (fancyhdr) \setlength{\headheight}{30.02956pt}. Warning: (fancyhdr) You might also make \topmargin smaller to compensate: Warning: (fancyhdr) \addtolength{\topmargin}{-18.02956pt}. Warning: Package fancyhdr Warning: \headheight is too small (12.0pt): Warning: (fancyhdr) Make it at least 30.02956pt, for example: Warning: (fancyhdr) \setlength{\headheight}{30.02956pt}. Warning: (fancyhdr) You might also make \topmargin smaller to compensate: Warning: (fancyhdr) \addtolength{\topmargin}{-18.02956pt}. Output created: /tmp/Rtmpf7RzPD/file36161fb5db93.pdf Warning in file.create(to[okay]) : cannot create file 'reportDir/12205333-4_ingreso_2023-09-01.pdf', reason 'Permission denied' processing file: ingreso.Rmd output file: ingreso.knit.md Warning: Package fancyhdr Warning: \headheight is too small (12.0pt): Warning: (fancyhdr) Make it at least 30.02956pt, for example: Warning: (fancyhdr) \setlength{\headheight}{30.02956pt}. Warning: (fancyhdr) You might also make \topmargin smaller to compensate: Warning: (fancyhdr) \addtolength{\topmargin}{-18.02956pt}. Warning: Package fancyhdr Warning: \headheight is too small (12.0pt): Warning: (fancyhdr) Make it at least 30.02956pt, for example: Warning: (fancyhdr) \setlength{\headheight}{30.02956pt}. Warning: (fancyhdr) You might also make \topmargin smaller to compensate: Warning: (fancyhdr) \addtolength{\topmargin}{-18.02956pt}. Output created: /tmp/Rtmpf7RzPD/file361661bc793e.pdf Warning in file.create(to[okay]) : cannot create file 'reportDir/122053334_ingreso_2023-09-01.pdf', reason 'Permission denied' Warning in file(con, "w") : cannot open file '/home/app/ShinyApps/UCI/logs/UCI/shinylogs_UCI_1693545899884625000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp Rows: 222 Columns: 522 ── Column specification ──────────────────────────────────────────────────────── Delimiter: "," chr (212): redcap_repeat_instrument, paciente_rut, patient_substr8, patient... dbl (150): record_id, redcap_repeat_instance, patient_l, patient_substr1, p... lgl (129): cama_paciente, paciente_edad, alcohol_carga_v2, tipo_de_inmunosu... dttm (8): fecha_hospitalizacion, fecha_ingreso_uci, vmi_fecha_inicio_1, vm... date (23): datos_generales_today, fech, f_nac, antecedentes_today, vacuna_c... ℹ Use `spec()` to retrieve the full column specification for this data. ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message. processing file: ingreso.Rmd output file: ingreso.knit.md Warning: Package fancyhdr Warning: \headheight is too small (12.0pt): Warning: (fancyhdr) Make it at least 30.02956pt, for example: Warning: (fancyhdr) \setlength{\headheight}{30.02956pt}. Warning: (fancyhdr) You might also make \topmargin smaller to compensate: Warning: (fancyhdr) \addtolength{\topmargin}{-18.02956pt}. Warning: Package fancyhdr Warning: \headheight is too small (12.0pt): Warning: (fancyhdr) Make it at least 30.02956pt, for example: Warning: (fancyhdr) \setlength{\headheight}{30.02956pt}. Warning: (fancyhdr) You might also make \topmargin smaller to compensate: Warning: (fancyhdr) \addtolength{\topmargin}{-18.02956pt}. Output created: /tmp/Rtmpf7RzPD/file36162f540158.pdf Warning in file.create(to[okay]) : cannot create file 'reportDir/12205333-4_ingreso_2023-09-01.pdf', reason 'Permission denied' processing file: ingreso.Rmd output file: ingreso.knit.md Warning: Package fancyhdr Warning: \headheight is too small (12.0pt): Warning: (fancyhdr) Make it at least 30.02956pt, for example: Warning: (fancyhdr) \setlength{\headheight}{30.02956pt}. Warning: (fancyhdr) You might also make \topmargin smaller to compensate: Warning: (fancyhdr) \addtolength{\topmargin}{-18.02956pt}. Warning: Package fancyhdr Warning: \headheight is too small (12.0pt): Warning: (fancyhdr) Make it at least 30.02956pt, for example: Warning: (fancyhdr) \setlength{\headheight}{30.02956pt}. Warning: (fancyhdr) You might also make \topmargin smaller to compensate: Warning: (fancyhdr) \addtolength{\topmargin}{-18.02956pt}. Output created: /tmp/Rtmpf7RzPD/file36165c4e307c.pdf Warning in file.create(to[okay]) : cannot create file 'reportDir/122053334_ingreso_2023-09-01.pdf', reason 'Permission denied' Rows: 222 Columns: 522 ── Column specification ──────────────────────────────────────────────────────── Delimiter: "," chr (212): redcap_repeat_instrument, paciente_rut, patient_substr8, patient... dbl (150): record_id, redcap_repeat_instance, patient_l, patient_substr1, p... lgl (129): cama_paciente, paciente_edad, alcohol_carga_v2, tipo_de_inmunosu... dttm (8): fecha_hospitalizacion, fecha_ingreso_uci, vmi_fecha_inicio_1, vm... date (23): datos_generales_today, fech, f_nac, antecedentes_today, vacuna_c... ℹ Use `spec()` to retrieve the full column specification for this data. ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message. Rows: 222 Columns: 522 ── Column specification ──────────────────────────────────────────────────────── Delimiter: "," chr (212): redcap_repeat_instrument, paciente_rut, patient_substr8, patient... dbl (150): record_id, redcap_repeat_instance, patient_l, patient_substr1, p... lgl (129): cama_paciente, paciente_edad, alcohol_carga_v2, tipo_de_inmunosu... dttm (8): fecha_hospitalizacion, fecha_ingreso_uci, vmi_fecha_inicio_1, vm... date (23): datos_generales_today, fech, f_nac, antecedentes_today, vacuna_c... ℹ Use `spec()` to retrieve the full column specification for this data. ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message. processing file: ingreso.Rmd output file: ingreso.knit.md Warning: Package fancyhdr Warning: \headheight is too small (12.0pt): Warning: (fancyhdr) Make it at least 30.02956pt, for example: Warning: (fancyhdr) \setlength{\headheight}{30.02956pt}. Warning: (fancyhdr) You might also make \topmargin smaller to compensate: Warning: (fancyhdr) \addtolength{\topmargin}{-18.02956pt}. Warning: Package fancyhdr Warning: \headheight is too small (12.0pt): Warning: (fancyhdr) Make it at least 30.02956pt, for example: Warning: (fancyhdr) \setlength{\headheight}{30.02956pt}. Warning: (fancyhdr) You might also make \topmargin smaller to compensate: Warning: (fancyhdr) \addtolength{\topmargin}{-18.02956pt}. Output created: /tmp/Rtmpf7RzPD/file3616b9fb90c.pdf Warning in file.create(to[okay]) : cannot create file 'reportDir/12205333-4_ingreso_2023-09-01.pdf', reason 'Permission denied' processing file: ingreso.Rmd output file: ingreso.knit.md Warning: Package fancyhdr Warning: \headheight is too small (12.0pt): Warning: (fancyhdr) Make it at least 30.02956pt, for example: Warning: (fancyhdr) \setlength{\headheight}{30.02956pt}. Warning: (fancyhdr) You might also make \topmargin smaller to compensate: Warning: (fancyhdr) \addtolength{\topmargin}{-18.02956pt}. Warning: Package fancyhdr Warning: \headheight is too small (12.0pt): Warning: (fancyhdr) Make it at least 30.02956pt, for example: Warning: (fancyhdr) \setlength{\headheight}{30.02956pt}. Warning: (fancyhdr) You might also make \topmargin smaller to compensate: Warning: (fancyhdr) \addtolength{\topmargin}{-18.02956pt}. Output created: /tmp/Rtmpf7RzPD/file36166c4da008.pdf Warning in file.create(to[okay]) : cannot create file 'reportDir/12205333-4_ingreso_2023-09-01.pdf', reason 'Permission denied' processing file: ingreso.Rmd output file: ingreso.knit.md Warning: Package fancyhdr Warning: \headheight is too small (12.0pt): Warning: (fancyhdr) Make it at least 30.02956pt, for example: Warning: (fancyhdr) \setlength{\headheight}{30.02956pt}. Warning: (fancyhdr) You might also make \topmargin smaller to compensate: Warning: (fancyhdr) \addtolength{\topmargin}{-18.02956pt}. Warning: Package fancyhdr Warning: \headheight is too small (12.0pt): Warning: (fancyhdr) Make it at least 30.02956pt, for example: Warning: (fancyhdr) \setlength{\headheight}{30.02956pt}. Warning: (fancyhdr) You might also make \topmargin smaller to compensate: Warning: (fancyhdr) \addtolength{\topmargin}{-18.02956pt}. Output created: /tmp/Rtmpf7RzPD/file361645687a75.pdf Warning in file.create(to[okay]) : cannot create file 'reportDir/12205333-4_ingreso_2023-09-01.pdf', reason 'Permission denied' processing file: ingreso.Rmd output file: ingreso.knit.md Warning: Package fancyhdr Warning: \headheight is too small (12.0pt): Warning: (fancyhdr) Make it at least 30.02956pt, for example: Warning: (fancyhdr) \setlength{\headheight}{30.02956pt}. Warning: (fancyhdr) You might also make \topmargin smaller to compensate: Warning: (fancyhdr) \addtolength{\topmargin}{-18.02956pt}. Warning: Package fancyhdr Warning: \headheight is too small (12.0pt): Warning: (fancyhdr) Make it at least 30.02956pt, for example: Warning: (fancyhdr) \setlength{\headheight}{30.02956pt}. Warning: (fancyhdr) You might also make \topmargin smaller to compensate: Warning: (fancyhdr) \addtolength{\topmargin}{-18.02956pt}. Output created: /tmp/Rtmpf7RzPD/file36162614415d.pdf Warning in file.create(to[okay]) : cannot create file 'reportDir/122053334_ingreso_2023-09-01.pdf', reason 'Permission denied' processing file: ingreso.Rmd output file: ingreso.knit.md Warning: Package fancyhdr Warning: \headheight is too small (12.0pt): Warning: (fancyhdr) Make it at least 30.02956pt, for example: Warning: (fancyhdr) \setlength{\headheight}{30.02956pt}. Warning: (fancyhdr) You might also make \topmargin smaller to compensate: Warning: (fancyhdr) \addtolength{\topmargin}{-18.02956pt}. Warning: Package fancyhdr Warning: \headheight is too small (12.0pt): Warning: (fancyhdr) Make it at least 30.02956pt, for example: Warning: (fancyhdr) \setlength{\headheight}{30.02956pt}. Warning: (fancyhdr) You might also make \topmargin smaller to compensate: Warning: (fancyhdr) \addtolength{\topmargin}{-18.02956pt}. Output created: /tmp/Rtmpf7RzPD/file361629e8dc4f.pdf Warning in file.create(to[okay]) : cannot create file 'reportDir/122053334_ingreso_2023-09-01.pdf', reason 'Permission denied' Rows: 223 Columns: 522 ── Column specification ──────────────────────────────────────────────────────── Delimiter: "," chr (212): redcap_repeat_instrument, paciente_rut, patient_substr8, patient... dbl (150): record_id, redcap_repeat_instance, patient_l, patient_substr1, p... lgl (129): cama_paciente, paciente_edad, alcohol_carga_v2, tipo_de_inmunosu... dttm (8): fecha_hospitalizacion, fecha_ingreso_uci, vmi_fecha_inicio_1, vm... date (23): datos_generales_today, fech, f_nac, antecedentes_today, vacuna_c... ℹ Use `spec()` to retrieve the full column specification for this data. ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message. Warning in file(con, "w") : cannot open file '/home/app/ShinyApps/UCI/logs/UCI/shinylogs_UCI_1693526338077393000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp Rows: 223 Columns: 522 ── Column specification ──────────────────────────────────────────────────────── Delimiter: "," chr (212): redcap_repeat_instrument, paciente_rut, patient_substr8, patient... dbl (150): record_id, redcap_repeat_instance, patient_l, patient_substr1, p... lgl (129): cama_paciente, paciente_edad, alcohol_carga_v2, tipo_de_inmunosu... dttm (8): fecha_hospitalizacion, fecha_ingreso_uci, vmi_fecha_inicio_1, vm... date (23): datos_generales_today, fech, f_nac, antecedentes_today, vacuna_c... ℹ Use `spec()` to retrieve the full column specification for this data. ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message. processing file: ingreso.Rmd output file: ingreso.knit.md Warning: Package fancyhdr Warning: \headheight is too small (12.0pt): Warning: (fancyhdr) Make it at least 30.02956pt, for example: Warning: (fancyhdr) \setlength{\headheight}{30.02956pt}. Warning: (fancyhdr) You might also make \topmargin smaller to compensate: Warning: (fancyhdr) \addtolength{\topmargin}{-18.02956pt}. Warning: Package fancyhdr Warning: \headheight is too small (12.0pt): Warning: (fancyhdr) Make it at least 30.02956pt, for example: Warning: (fancyhdr) \setlength{\headheight}{30.02956pt}. Warning: (fancyhdr) You might also make \topmargin smaller to compensate: Warning: (fancyhdr) \addtolength{\topmargin}{-18.02956pt}. Warning: Package fancyhdr Warning: \headheight is too small (12.0pt): Warning: (fancyhdr) Make it at least 30.02956pt, for example: Warning: (fancyhdr) \setlength{\headheight}{30.02956pt}. Warning: (fancyhdr) You might also make \topmargin smaller to compensate: Warning: (fancyhdr) \addtolength{\topmargin}{-18.02956pt}. Warning: Package fancyhdr Warning: \headheight is too small (12.0pt): Warning: (fancyhdr) Make it at least 30.02956pt, for example: Warning: (fancyhdr) \setlength{\headheight}{30.02956pt}. Warning: (fancyhdr) You might also make \topmargin smaller to compensate: Warning: (fancyhdr) \addtolength{\topmargin}{-18.02956pt}. Output created: /tmp/Rtmpf7RzPD/file3616be35e79.pdf Warning in file.create(to[okay]) : cannot create file 'reportDir/7767305-9_ingreso_2023-09-01.pdf', reason 'Permission denied' processing file: ingreso.Rmd output file: ingreso.knit.md Warning: Package fancyhdr Warning: \headheight is too small (12.0pt): Warning: (fancyhdr) Make it at least 30.02956pt, for example: Warning: (fancyhdr) \setlength{\headheight}{30.02956pt}. Warning: (fancyhdr) You might also make \topmargin smaller to compensate: Warning: (fancyhdr) \addtolength{\topmargin}{-18.02956pt}. Warning: Package fancyhdr Warning: \headheight is too small (12.0pt): Warning: (fancyhdr) Make it at least 30.02956pt, for example: Warning: (fancyhdr) \setlength{\headheight}{30.02956pt}. Warning: (fancyhdr) You might also make \topmargin smaller to compensate: Warning: (fancyhdr) \addtolength{\topmargin}{-18.02956pt}. Warning: Package fancyhdr Warning: \headheight is too small (12.0pt): Warning: (fancyhdr) Make it at least 30.02956pt, for example: Warning: (fancyhdr) \setlength{\headheight}{30.02956pt}. Warning: (fancyhdr) You might also make \topmargin smaller to compensate: Warning: (fancyhdr) \addtolength{\topmargin}{-18.02956pt}. Warning: Package fancyhdr Warning: \headheight is too small (12.0pt): Warning: (fancyhdr) Make it at least 30.02956pt, for example: Warning: (fancyhdr) \setlength{\headheight}{30.02956pt}. Warning: (fancyhdr) You might also make \topmargin smaller to compensate: Warning: (fancyhdr) \addtolength{\topmargin}{-18.02956pt}. Output created: /tmp/Rtmpf7RzPD/file36161d539fe3.pdf Warning in file.create(to[okay]) : cannot create file 'reportDir/7767305-9_ingreso_2023-09-01.pdf', reason 'Permission denied' Warning in file(con, "w") : cannot open file '/home/app/ShinyApps/UCI/logs/UCI/shinylogs_UCI_1693581998004795000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp Rows: 223 Columns: 522 ── Column specification ──────────────────────────────────────────────────────── Delimiter: "," chr (212): redcap_repeat_instrument, paciente_rut, patient_substr8, patient... dbl (150): record_id, redcap_repeat_instance, patient_l, patient_substr1, p... lgl (129): cama_paciente, paciente_edad, alcohol_carga_v2, tipo_de_inmunosu... dttm (8): fecha_hospitalizacion, fecha_ingreso_uci, vmi_fecha_inicio_1, vm... date (23): datos_generales_today, fech, f_nac, antecedentes_today, vacuna_c... ℹ Use `spec()` to retrieve the full column specification for this data. ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message. processing file: ingreso.Rmd output file: ingreso.knit.md Warning: Package fancyhdr Warning: \headheight is too small (12.0pt): Warning: (fancyhdr) Make it at least 30.02956pt, for example: Warning: (fancyhdr) \setlength{\headheight}{30.02956pt}. Warning: (fancyhdr) You might also make \topmargin smaller to compensate: Warning: (fancyhdr) \addtolength{\topmargin}{-18.02956pt}. Warning: Package fancyhdr Warning: \headheight is too small (12.0pt): Warning: (fancyhdr) Make it at least 30.02956pt, for example: Warning: (fancyhdr) \setlength{\headheight}{30.02956pt}. Warning: (fancyhdr) You might also make \topmargin smaller to compensate: Warning: (fancyhdr) \addtolength{\topmargin}{-18.02956pt}. Output created: /tmp/Rtmpf7RzPD/file36166acd5117.pdf Warning in file.create(to[okay]) : cannot create file 'reportDir/7858923-k_ingreso_2023-09-01.pdf', reason 'Permission denied' R: src/unix/core.c:299: uv__finish_close: Assertion `0' failed. -bash: line 1: 13846 Aborted R --no-save --slave -f \/opt\/shiny-server\/R\/SockJSAdapter\.R