su: ignore --preserve-environment, it's mutually exclusive to --login.

Listening on http://127.0.0.1:46060
Rows: 234 Columns: 522
── Column specification ────────────────────────────────────────────────────────
Delimiter: ","
chr  (215): redcap_repeat_instrument, paciente_rut, patient_substr8, patient...
dbl  (150): record_id, redcap_repeat_instance, patient_l, patient_substr1, p...
lgl  (126): cama_paciente, paciente_edad, alcohol_carga_v2, tipo_de_inmunosu...
dttm   (8): fecha_hospitalizacion, fecha_ingreso_uci, vmi_fecha_inicio_1, vm...
date  (23): datos_generales_today, fech, f_nac, antecedentes_today, vacuna_c...

ℹ Use `spec()` to retrieve the full column specification for this data.
ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message.
Rows: 234 Columns: 522
── Column specification ────────────────────────────────────────────────────────
Delimiter: ","
chr  (215): redcap_repeat_instrument, paciente_rut, patient_substr8, patient...
dbl  (150): record_id, redcap_repeat_instance, patient_l, patient_substr1, p...
lgl  (126): cama_paciente, paciente_edad, alcohol_carga_v2, tipo_de_inmunosu...
dttm   (8): fecha_hospitalizacion, fecha_ingreso_uci, vmi_fecha_inicio_1, vm...
date  (23): datos_generales_today, fech, f_nac, antecedentes_today, vacuna_c...

ℹ Use `spec()` to retrieve the full column specification for this data.
ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message.
Warning in file(con, "w") :
  cannot open file '/home/app/ShinyApps/UCI/logs/UCI/shinylogs_UCI_1693781636181866000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp


processing file: ingreso.Rmd
output file: ingreso.knit.md

Warning: Package fancyhdr Warning: \headheight is too small (12.0pt): 
Warning: (fancyhdr)                Make it at least 30.02956pt, for example:
Warning: (fancyhdr)                \setlength{\headheight}{30.02956pt}.
Warning: (fancyhdr)                You might also make \topmargin smaller to compensate:
Warning: (fancyhdr)                \addtolength{\topmargin}{-18.02956pt}.
Warning: Package fancyhdr Warning: \headheight is too small (12.0pt): 
Warning: (fancyhdr)                Make it at least 30.02956pt, for example:
Warning: (fancyhdr)                \setlength{\headheight}{30.02956pt}.
Warning: (fancyhdr)                You might also make \topmargin smaller to compensate:
Warning: (fancyhdr)                \addtolength{\topmargin}{-18.02956pt}.
Warning: Package fancyhdr Warning: \headheight is too small (12.0pt): 
Warning: (fancyhdr)                Make it at least 30.02956pt, for example:
Warning: (fancyhdr)                \setlength{\headheight}{30.02956pt}.
Warning: (fancyhdr)                You might also make \topmargin smaller to compensate:
Warning: (fancyhdr)                \addtolength{\topmargin}{-18.02956pt}.

Output created: /tmp/RtmpS4F6PL/filef3f56455c5c.pdf
Warning in file.create(to[okay]) :
  cannot create file 'reportDir/4336708-0_ingreso_2023-09-03.pdf', reason 'Permission denied'
Rows: 234 Columns: 522
── Column specification ────────────────────────────────────────────────────────
Delimiter: ","
chr  (215): redcap_repeat_instrument, paciente_rut, patient_substr8, patient...
dbl  (150): record_id, redcap_repeat_instance, patient_l, patient_substr1, p...
lgl  (126): cama_paciente, paciente_edad, alcohol_carga_v2, tipo_de_inmunosu...
dttm   (8): fecha_hospitalizacion, fecha_ingreso_uci, vmi_fecha_inicio_1, vm...
date  (23): datos_generales_today, fech, f_nac, antecedentes_today, vacuna_c...

ℹ Use `spec()` to retrieve the full column specification for this data.
ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message.
Warning in file(con, "w") :
  cannot open file '/home/app/ShinyApps/UCI/logs/UCI/shinylogs_UCI_1693793136103707000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
Rows: 234 Columns: 522
── Column specification ────────────────────────────────────────────────────────
Delimiter: ","
chr  (215): redcap_repeat_instrument, paciente_rut, patient_substr8, patient...
dbl  (150): record_id, redcap_repeat_instance, patient_l, patient_substr1, p...
lgl  (126): cama_paciente, paciente_edad, alcohol_carga_v2, tipo_de_inmunosu...
dttm   (8): fecha_hospitalizacion, fecha_ingreso_uci, vmi_fecha_inicio_1, vm...
date  (23): datos_generales_today, fech, f_nac, antecedentes_today, vacuna_c...

ℹ Use `spec()` to retrieve the full column specification for this data.
ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message.


processing file: ingreso.Rmd
Quitting from lines 2-85 (ingreso.Rmd) 
Warning: Error in if: argument is of length zero
  1: runApp


processing file: ingreso.Rmd
Quitting from lines 2-85 (ingreso.Rmd) 
Warning: Error in if: argument is of length zero
  1: runApp
Rows: 234 Columns: 522
── Column specification ────────────────────────────────────────────────────────
Delimiter: ","
chr  (215): redcap_repeat_instrument, paciente_rut, patient_substr8, patient...
dbl  (150): record_id, redcap_repeat_instance, patient_l, patient_substr1, p...
lgl  (126): cama_paciente, paciente_edad, alcohol_carga_v2, tipo_de_inmunosu...
dttm   (8): fecha_hospitalizacion, fecha_ingreso_uci, vmi_fecha_inicio_1, vm...
date  (23): datos_generales_today, fech, f_nac, antecedentes_today, vacuna_c...

ℹ Use `spec()` to retrieve the full column specification for this data.
ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message.


processing file: ingreso.Rmd
output file: ingreso.knit.md

Warning: Package fancyhdr Warning: \headheight is too small (12.0pt): 
Warning: (fancyhdr)                Make it at least 30.02956pt, for example:
Warning: (fancyhdr)                \setlength{\headheight}{30.02956pt}.
Warning: (fancyhdr)                You might also make \topmargin smaller to compensate:
Warning: (fancyhdr)                \addtolength{\topmargin}{-18.02956pt}.
Warning: Package fancyhdr Warning: \headheight is too small (12.0pt): 
Warning: (fancyhdr)                Make it at least 30.02956pt, for example:
Warning: (fancyhdr)                \setlength{\headheight}{30.02956pt}.
Warning: (fancyhdr)                You might also make \topmargin smaller to compensate:
Warning: (fancyhdr)                \addtolength{\topmargin}{-18.02956pt}.
Warning: Package fancyhdr Warning: \headheight is too small (12.0pt): 
Warning: (fancyhdr)                Make it at least 30.02956pt, for example:
Warning: (fancyhdr)                \setlength{\headheight}{30.02956pt}.
Warning: (fancyhdr)                You might also make \topmargin smaller to compensate:
Warning: (fancyhdr)                \addtolength{\topmargin}{-18.02956pt}.

Output created: /tmp/RtmpS4F6PL/filef3f467d53ed.pdf
Warning in file.create(to[okay]) :
  cannot create file 'reportDir/8115843-6_ingreso_2023-09-04.pdf', reason 'Permission denied'
Warning in file(con, "w") :
  cannot open file '/home/app/ShinyApps/UCI/logs/UCI/shinylogs_UCI_1693781650110157000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
Warning in file(con, "w") :
  cannot open file '/home/app/ShinyApps/UCI/logs/UCI/shinylogs_UCI_1693823286471211000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
Rows: 234 Columns: 522
── Column specification ────────────────────────────────────────────────────────
Delimiter: ","
chr  (215): redcap_repeat_instrument, paciente_rut, patient_substr8, patient...
dbl  (150): record_id, redcap_repeat_instance, patient_l, patient_substr1, p...
lgl  (126): cama_paciente, paciente_edad, alcohol_carga_v2, tipo_de_inmunosu...
dttm   (8): fecha_hospitalizacion, fecha_ingreso_uci, vmi_fecha_inicio_1, vm...
date  (23): datos_generales_today, fech, f_nac, antecedentes_today, vacuna_c...

ℹ Use `spec()` to retrieve the full column specification for this data.
ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message.
Warning in file(con, "w") :
  cannot open file '/home/app/ShinyApps/UCI/logs/UCI/shinylogs_UCI_1693835716267918000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
Rows: 235 Columns: 522
── Column specification ────────────────────────────────────────────────────────
Delimiter: ","
chr  (215): redcap_repeat_instrument, paciente_rut, patient_substr8, patient...
dbl  (150): record_id, redcap_repeat_instance, patient_l, patient_substr1, p...
lgl  (126): cama_paciente, paciente_edad, alcohol_carga_v2, tipo_de_inmunosu...
dttm   (8): fecha_hospitalizacion, fecha_ingreso_uci, vmi_fecha_inicio_1, vm...
date  (23): datos_generales_today, fech, f_nac, antecedentes_today, vacuna_c...

ℹ Use `spec()` to retrieve the full column specification for this data.
ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message.


processing file: egreso.Rmd
output file: egreso.knit.md

Warning: Package fancyhdr Warning: \headheight is too small (12.0pt): 
Warning: (fancyhdr)                Make it at least 30.02956pt, for example:
Warning: (fancyhdr)                \setlength{\headheight}{30.02956pt}.
Warning: (fancyhdr)                You might also make \topmargin smaller to compensate:
Warning: (fancyhdr)                \addtolength{\topmargin}{-18.02956pt}.
Warning: Package fancyhdr Warning: \headheight is too small (12.0pt): 
Warning: (fancyhdr)                Make it at least 30.02956pt, for example:
Warning: (fancyhdr)                \setlength{\headheight}{30.02956pt}.
Warning: (fancyhdr)                You might also make \topmargin smaller to compensate:
Warning: (fancyhdr)                \addtolength{\topmargin}{-18.02956pt}.
Warning: Package fancyhdr Warning: \headheight is too small (12.0pt): 
Warning: (fancyhdr)                Make it at least 30.02956pt, for example:
Warning: (fancyhdr)                \setlength{\headheight}{30.02956pt}.
Warning: (fancyhdr)                You might also make \topmargin smaller to compensate:
Warning: (fancyhdr)                \addtolength{\topmargin}{-18.02956pt}.
Warning: Package fancyhdr Warning: \headheight is too small (12.0pt): 
Warning: (fancyhdr)                Make it at least 30.02956pt, for example:
Warning: (fancyhdr)                \setlength{\headheight}{30.02956pt}.
Warning: (fancyhdr)                You might also make \topmargin smaller to compensate:
Warning: (fancyhdr)                \addtolength{\topmargin}{-18.02956pt}.
Warning: Package fancyhdr Warning: \headheight is too small (12.0pt): 
Warning: (fancyhdr)                Make it at least 30.02956pt, for example:
Warning: (fancyhdr)                \setlength{\headheight}{30.02956pt}.
Warning: (fancyhdr)                You might also make \topmargin smaller to compensate:
Warning: (fancyhdr)                \addtolength{\topmargin}{-18.02956pt}.

Output created: /tmp/RtmpS4F6PL/filef3f649670e7.pdf
Warning in file.create(to[okay]) :
  cannot create file 'reportDir/9388658-5_egreso_2023-09-04.pdf', reason 'Permission denied'
R: src/unix/core.c:259: uv__finish_close: Assertion `!(handle->flags & UV_HANDLE_CLOSED)' failed.
-bash: line 1:  3903 Aborted                 R --no-save --slave -f \/opt\/shiny-server\/R\/SockJSAdapter\.R