su: ignore --preserve-environment, it's mutually exclusive to --login.

Listening on http://127.0.0.1:33133
Rows: 269 Columns: 522
── Column specification ────────────────────────────────────────────────────────
Delimiter: ","
chr  (220): redcap_repeat_instrument, paciente_rut, patient_substr8, patient...
dbl  (150): record_id, redcap_repeat_instance, patient_l, patient_substr1, p...
lgl  (121): cama_paciente, paciente_edad, alcohol_carga_v2, tipo_de_inmunosu...
dttm   (8): fecha_hospitalizacion, fecha_ingreso_uci, vmi_fecha_inicio_1, vm...
date  (23): datos_generales_today, fech, f_nac, antecedentes_today, vacuna_c...

ℹ Use `spec()` to retrieve the full column specification for this data.
ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message.


processing file: egreso.Rmd
output file: egreso.knit.md

Warning: Package fancyhdr Warning: \headheight is too small (12.0pt): 
Warning: (fancyhdr)                Make it at least 30.02956pt, for example:
Warning: (fancyhdr)                \setlength{\headheight}{30.02956pt}.
Warning: (fancyhdr)                You might also make \topmargin smaller to compensate:
Warning: (fancyhdr)                \addtolength{\topmargin}{-18.02956pt}.
Warning: Package fancyhdr Warning: \headheight is too small (12.0pt): 
Warning: (fancyhdr)                Make it at least 30.02956pt, for example:
Warning: (fancyhdr)                \setlength{\headheight}{30.02956pt}.
Warning: (fancyhdr)                You might also make \topmargin smaller to compensate:
Warning: (fancyhdr)                \addtolength{\topmargin}{-18.02956pt}.

Output created: /tmp/RtmpXD2FLc/file140c55d1b475.pdf
Warning in file.create(to[okay]) :
  cannot create file 'reportDir/13035146-8_egreso_2023-09-08.pdf', reason 'Permission denied'
Rows: 269 Columns: 522
── Column specification ────────────────────────────────────────────────────────
Delimiter: ","
chr  (220): redcap_repeat_instrument, paciente_rut, patient_substr8, patient...
dbl  (150): record_id, redcap_repeat_instance, patient_l, patient_substr1, p...
lgl  (121): cama_paciente, paciente_edad, alcohol_carga_v2, tipo_de_inmunosu...
dttm   (8): fecha_hospitalizacion, fecha_ingreso_uci, vmi_fecha_inicio_1, vm...
date  (23): datos_generales_today, fech, f_nac, antecedentes_today, vacuna_c...

ℹ Use `spec()` to retrieve the full column specification for this data.
ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message.
Warning in file(con, "w") :
  cannot open file '/home/app/ShinyApps/UCI/logs/UCI/shinylogs_UCI_1694169797089333000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
Rows: 269 Columns: 522
── Column specification ────────────────────────────────────────────────────────
Delimiter: ","
chr  (220): redcap_repeat_instrument, paciente_rut, patient_substr8, patient...
dbl  (150): record_id, redcap_repeat_instance, patient_l, patient_substr1, p...
lgl  (121): cama_paciente, paciente_edad, alcohol_carga_v2, tipo_de_inmunosu...
dttm   (8): fecha_hospitalizacion, fecha_ingreso_uci, vmi_fecha_inicio_1, vm...
date  (23): datos_generales_today, fech, f_nac, antecedentes_today, vacuna_c...

ℹ Use `spec()` to retrieve the full column specification for this data.
ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message.


processing file: egreso.Rmd
output file: egreso.knit.md

Warning: Package fancyhdr Warning: \headheight is too small (12.0pt): 
Warning: (fancyhdr)                Make it at least 30.02956pt, for example:
Warning: (fancyhdr)                \setlength{\headheight}{30.02956pt}.
Warning: (fancyhdr)                You might also make \topmargin smaller to compensate:
Warning: (fancyhdr)                \addtolength{\topmargin}{-18.02956pt}.
Warning: Package fancyhdr Warning: \headheight is too small (12.0pt): 
Warning: (fancyhdr)                Make it at least 30.02956pt, for example:
Warning: (fancyhdr)                \setlength{\headheight}{30.02956pt}.
Warning: (fancyhdr)                You might also make \topmargin smaller to compensate:
Warning: (fancyhdr)                \addtolength{\topmargin}{-18.02956pt}.

Output created: /tmp/RtmpXD2FLc/file140c22097b75.pdf
Warning in file.create(to[okay]) :
  cannot create file 'reportDir/13035146-8_egreso_2023-09-08.pdf', reason 'Permission denied'
Warning in file(con, "w") :
  cannot open file '/home/app/ShinyApps/UCI/logs/UCI/shinylogs_UCI_1694169880736941000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
Rows: 269 Columns: 522
── Column specification ────────────────────────────────────────────────────────
Delimiter: ","
chr  (220): redcap_repeat_instrument, paciente_rut, patient_substr8, patient...
dbl  (150): record_id, redcap_repeat_instance, patient_l, patient_substr1, p...
lgl  (121): cama_paciente, paciente_edad, alcohol_carga_v2, tipo_de_inmunosu...
dttm   (8): fecha_hospitalizacion, fecha_ingreso_uci, vmi_fecha_inicio_1, vm...
date  (23): datos_generales_today, fech, f_nac, antecedentes_today, vacuna_c...

ℹ Use `spec()` to retrieve the full column specification for this data.
ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message.


processing file: ingreso.Rmd
output file: ingreso.knit.md

Warning: Package fancyhdr Warning: \headheight is too small (12.0pt): 
Warning: (fancyhdr)                Make it at least 30.02956pt, for example:
Warning: (fancyhdr)                \setlength{\headheight}{30.02956pt}.
Warning: (fancyhdr)                You might also make \topmargin smaller to compensate:
Warning: (fancyhdr)                \addtolength{\topmargin}{-18.02956pt}.
Warning: Package fancyhdr Warning: \headheight is too small (12.0pt): 
Warning: (fancyhdr)                Make it at least 30.02956pt, for example:
Warning: (fancyhdr)                \setlength{\headheight}{30.02956pt}.
Warning: (fancyhdr)                You might also make \topmargin smaller to compensate:
Warning: (fancyhdr)                \addtolength{\topmargin}{-18.02956pt}.

Output created: /tmp/RtmpXD2FLc/file140c30ec5547.pdf
Warning in file.create(to[okay]) :
  cannot create file 'reportDir/10119950-9_ingreso_2023-09-08.pdf', reason 'Permission denied'
Rows: 270 Columns: 522
── Column specification ────────────────────────────────────────────────────────
Delimiter: ","
chr  (220): redcap_repeat_instrument, paciente_rut, patient_substr8, patient...
dbl  (150): record_id, redcap_repeat_instance, patient_l, patient_substr1, p...
lgl  (121): cama_paciente, paciente_edad, alcohol_carga_v2, tipo_de_inmunosu...
dttm   (8): fecha_hospitalizacion, fecha_ingreso_uci, vmi_fecha_inicio_1, vm...
date  (23): datos_generales_today, fech, f_nac, antecedentes_today, vacuna_c...

ℹ Use `spec()` to retrieve the full column specification for this data.
ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message.


processing file: ingreso.Rmd
Quitting from lines 2-85 (ingreso.Rmd) 
Warning: Error in if: argument is of length zero
  1: runApp
Rows: 270 Columns: 522
── Column specification ────────────────────────────────────────────────────────
Delimiter: ","
chr  (220): redcap_repeat_instrument, paciente_rut, patient_substr8, patient...
dbl  (150): record_id, redcap_repeat_instance, patient_l, patient_substr1, p...
lgl  (121): cama_paciente, paciente_edad, alcohol_carga_v2, tipo_de_inmunosu...
dttm   (8): fecha_hospitalizacion, fecha_ingreso_uci, vmi_fecha_inicio_1, vm...
date  (23): datos_generales_today, fech, f_nac, antecedentes_today, vacuna_c...

ℹ Use `spec()` to retrieve the full column specification for this data.
ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message.
Warning in file(con, "w") :
  cannot open file '/home/app/ShinyApps/UCI/logs/UCI/shinylogs_UCI_1694173179784666000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp


processing file: ingreso.Rmd
output file: ingreso.knit.md

Warning: Package fancyhdr Warning: \headheight is too small (12.0pt): 
Warning: (fancyhdr)                Make it at least 30.02956pt, for example:
Warning: (fancyhdr)                \setlength{\headheight}{30.02956pt}.
Warning: (fancyhdr)                You might also make \topmargin smaller to compensate:
Warning: (fancyhdr)                \addtolength{\topmargin}{-18.02956pt}.
Warning: Package fancyhdr Warning: \headheight is too small (12.0pt): 
Warning: (fancyhdr)                Make it at least 30.02956pt, for example:
Warning: (fancyhdr)                \setlength{\headheight}{30.02956pt}.
Warning: (fancyhdr)                You might also make \topmargin smaller to compensate:
Warning: (fancyhdr)                \addtolength{\topmargin}{-18.02956pt}.

Output created: /tmp/RtmpXD2FLc/file140c1a0bcb91.pdf
Warning in file.create(to[okay]) :
  cannot create file 'reportDir/13474238-0_ingreso_2023-09-08.pdf', reason 'Permission denied'
Warning in file(con, "w") :
  cannot open file '/home/app/ShinyApps/UCI/logs/UCI/shinylogs_UCI_1694171844090373000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
Rows: 271 Columns: 522
── Column specification ────────────────────────────────────────────────────────
Delimiter: ","
chr  (220): redcap_repeat_instrument, paciente_rut, patient_substr8, patient...
dbl  (150): record_id, redcap_repeat_instance, patient_l, patient_substr1, p...
lgl  (121): cama_paciente, paciente_edad, alcohol_carga_v2, tipo_de_inmunosu...
dttm   (8): fecha_hospitalizacion, fecha_ingreso_uci, vmi_fecha_inicio_1, vm...
date  (23): datos_generales_today, fech, f_nac, antecedentes_today, vacuna_c...

ℹ Use `spec()` to retrieve the full column specification for this data.
ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message.


processing file: ingreso.Rmd
output file: ingreso.knit.md

Warning: Package fancyhdr Warning: \headheight is too small (12.0pt): 
Warning: (fancyhdr)                Make it at least 30.02956pt, for example:
Warning: (fancyhdr)                \setlength{\headheight}{30.02956pt}.
Warning: (fancyhdr)                You might also make \topmargin smaller to compensate:
Warning: (fancyhdr)                \addtolength{\topmargin}{-18.02956pt}.
Warning: Package fancyhdr Warning: \headheight is too small (12.0pt): 
Warning: (fancyhdr)                Make it at least 30.02956pt, for example:
Warning: (fancyhdr)                \setlength{\headheight}{30.02956pt}.
Warning: (fancyhdr)                You might also make \topmargin smaller to compensate:
Warning: (fancyhdr)                \addtolength{\topmargin}{-18.02956pt}.

Output created: /tmp/RtmpXD2FLc/file140c7a485543.pdf
Warning in file.create(to[okay]) :
  cannot create file 'reportDir/16467522-K_ingreso_2023-09-08.pdf', reason 'Permission denied'
Rows: 271 Columns: 522
── Column specification ────────────────────────────────────────────────────────
Delimiter: ","
chr  (220): redcap_repeat_instrument, paciente_rut, patient_substr8, patient...
dbl  (150): record_id, redcap_repeat_instance, patient_l, patient_substr1, p...
lgl  (121): cama_paciente, paciente_edad, alcohol_carga_v2, tipo_de_inmunosu...
dttm   (8): fecha_hospitalizacion, fecha_ingreso_uci, vmi_fecha_inicio_1, vm...
date  (23): datos_generales_today, fech, f_nac, antecedentes_today, vacuna_c...

ℹ Use `spec()` to retrieve the full column specification for this data.
ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message.


processing file: ingreso.Rmd
output file: ingreso.knit.md

Warning: Package fancyhdr Warning: \headheight is too small (12.0pt): 
Warning: (fancyhdr)                Make it at least 30.02956pt, for example:
Warning: (fancyhdr)                \setlength{\headheight}{30.02956pt}.
Warning: (fancyhdr)                You might also make \topmargin smaller to compensate:
Warning: (fancyhdr)                \addtolength{\topmargin}{-18.02956pt}.
Warning: Package fancyhdr Warning: \headheight is too small (12.0pt): 
Warning: (fancyhdr)                Make it at least 30.02956pt, for example:
Warning: (fancyhdr)                \setlength{\headheight}{30.02956pt}.
Warning: (fancyhdr)                You might also make \topmargin smaller to compensate:
Warning: (fancyhdr)                \addtolength{\topmargin}{-18.02956pt}.

Output created: /tmp/RtmpXD2FLc/file140c4a924729.pdf
Warning in file.create(to[okay]) :
  cannot create file 'reportDir/16467522-K_ingreso_2023-09-08.pdf', reason 'Permission denied'
Warning in file(con, "w") :
  cannot open file '/home/app/ShinyApps/UCI/logs/UCI/shinylogs_UCI_1694174354045810000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
Warning in file(con, "w") :
  cannot open file '/home/app/ShinyApps/UCI/logs/UCI/shinylogs_UCI_1694174278501131000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
R: src/unix/core.c:299: uv__finish_close: Assertion `0' failed.
-bash: line 1:  5132 Aborted                 R --no-save --slave -f \/opt\/shiny-server\/R\/SockJSAdapter\.R